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When digesting protein and some fats, the stomach lining must be protected from getting digested by pepsin. There are two points to consider when describing how the stomach lining is protected. Firstly, the enzyme pepsin is synthesized in an inactive form (pepsinogen), which is activated by the acid and other proteases in the stomach contents. This protects the cells which secrete pepsin, because pepsinogen does not have the full enzyme functionality of pepsin. Second, the stomach has a thick mucus lining that protects the underlying tissue from the action of the digestive juices. When this mucus lining is ruptured, ulcers can form in the stomach. Ulcers are open wounds in or on an organ caused by bacteria ( Helicobacter pylori ) when the mucus lining is ruptured and fails to reform.

Small intestine

Chyme moves from the stomach to the small intestine. The small intestine is the organ where the digestion of protein, fats, and carbohydrates is completed. The small intestine is a long tube-like organ with a highly folded surface containing finger-like projections called the villi . The apical surface of each villus has many microscopic projections called microvilli. These structures, illustrated in [link] , are lined with epithelial cells on the luminal side and allow for the nutrients to be absorbed from the digested food and absorbed into the blood stream on the other side. The villi and microvilli, with their many folds, increase the surface area of the intestine and increase absorption efficiency of the nutrients. Most absorbed nutrients (sugars, amino acids and nucleotides) in the blood are carried into the hepatic portal vein, which leads to the liver. There, the liver regulates the distribution of nutrients to the rest of the body and removes toxic substances, including drugs, alcohol, and some pathogens. Fatty acids, resulting from digestion of fat in the small intestine, do not enter the blood stream directly, but are taken up by the lymphatic system in the small intestine. These are eventually delivered to the blood via the thoracic duct, to be metabolized by the liver as is the case for the other nutrients.

Illustration shows a cross section of the small intestine, the lumen, or inside of which has many fingerlike projections called villi. Muscle layers wrap around the outside of the intestine, and blood vessels interact with the muscle layer. A blowup shows that capillaries and lymphatic vessels travel up inside the villi. The surface of each villus is covered with hairline microvilli.
Villi are folds on the small intestine lining that increase the surface area to facilitate the absorption of nutrients.

The human small intestine is over 6m long and is divided into three parts: the duodenum, the jejunum, and the ileum. The “C-shaped,” fixed part of the small intestine is called the duodenum and is shown in [link] . The duodenum is separated from the stomach by the pyloric sphincter which opens to allow chyme to move from the stomach to the duodenum. In the duodenum, chyme is mixed with pancreatic juices in an alkaline solution rich in bicarbonate that neutralizes the acidity of chyme and acts as a buffer. Pancreatic juices also contain several digestive enzymes. Digestive juices from the pancreas, liver, and gallbladder, as well as from gland cells of the intestinal wall itself, enter the duodenum. Bile is produced in the liver and stored and concentrated in the gallbladder. Bile contains bile salts which emulsify lipids while the pancreas produces enzymes that catabolize starches, disaccharides, proteins, and fats. These digestive juices break down the food particles in the chyme into glucose, triglycerides, and amino acids. Some chemical digestion of food takes place in the duodenum. Absorption of fatty acids into the lymphatic system also takes place in the duodenum.

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Source:  OpenStax, Principles of biology. OpenStax CNX. Aug 09, 2016 Download for free at http://legacy.cnx.org/content/col11569/1.25
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