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  • When might an organism use the ED pathway or the PPP for glycolysis?

Transition reaction, coenzyme a, and the krebs cycle

Glycolysis produces pyruvate, which can be further oxidized to capture more energy. For pyruvate to enter the next oxidative pathway, it must first be decarboxylated by the enzyme complex pyruvate dehydrogenase to a two-carbon acetyl group in the transition reaction , also called the bridge reaction (see Appendix C and [link] ). In the transition reaction, electrons are also transferred to NAD + to form NADH. To proceed to the next phase of this metabolic process, the comparatively tiny two-carbon acetyl must be attached to a very large carrier compound called coenzyme A (CoA) . The transition reaction occurs in the mitochondrial matrix of eukaryotes; in prokaryotes, it occurs in the cytoplasm because prokaryotes lack membrane-enclosed organelles.

Coenzyme A is made of a 5 carbon sugar in a ring. Attached to carbon 1 is adenine, attached to carbon 3 is a phosphate group. Attached to carbon 5 (which is out of the ring) are two phosphate groups and a carbon/nitrogen chain with a sulfur at the end. The acetyl group binds to this final sulfur.
(a) Coenzyme A is shown here without an attached acetyl group. (b) Coenzyme A is shown here with an attached acetyl group.

The Krebs cycle transfers remaining electrons from the acetyl group produced during the transition reaction to electron carrier molecules, thus reducing them. The Krebs cycle also occurs in the cytoplasm of prokaryotes along with glycolysis and the transition reaction, but it takes place in the mitochondrial matrix of eukaryotic cells where the transition reaction also occurs. The Krebs cycle is named after its discoverer, British scientist Hans Adolf Krebs (1900–1981) and is also called the citric acid cycle , or the tricarboxylic acid cycle (TCA) because citric acid has three carboxyl groups in its structure. Unlike glycolysis, the Krebs cycle is a closed loop: The last part of the pathway regenerates the compound used in the first step ( [link] ). The eight steps of the cycle are a series of chemical reactions that capture the two-carbon acetyl group (the CoA carrier does not enter the Krebs cycle) from the transition reaction, which is added to a four-carbon intermediate in the Krebs cycle, producing the six-carbon intermediate citric acid (giving the alternate name for this cycle). As one turn of the cycle returns to the starting point of the four-carbon intermediate, the cycle produces two CO 2 molecules, one ATP molecule (or an equivalent, such as guanosine triphosphate [GTP]) produced by substrate-level phosphorylation, and three molecules of NADH and one of FADH 2 . (A discussion and detailed illustration of the full Krebs cycle appear in Appendix C .)

Although many organisms use the Krebs cycle as described as part of glucose metabolism, several of the intermediate compounds in the Krebs cycle can be used in synthesizing a wide variety of important cellular molecules, including amino acids, chlorophylls, fatty acids, and nucleotides; therefore, the cycle is both anabolic and catabolic ( [link] ).

The citric acid cycle is drawn as a circle with arrows around the outside showing what enters and exits the cycle. 3 NAD+ are converted to 3 NADH, 1 FAD is converted to 1 FADH2, 2 CO2 leave the cycle, ADP or GDP are converted to ATP or GTP. Acetyl-CoA enters and CoA leaves (leaving the 2 carbons as part of the cycle.
The Krebs cycle, also known as the citric acid cycle, is summarized here. Note incoming two-carbon acetyl results in the main outputs per turn of two CO 2 , three NADH, one FADH 2 , and one ATP (or GTP) molecules made by substrate-level phosphorylation. Two turns of the Krebs cycle are required to process all of the carbon from one glucose molecule.
Details of the Kreb’s cycle. Acetyl-CoA (C2) enter at the top (along with water). SH-CoA leaves. The 2 carbons of Acetyl-CoA bind with the 4 carbons of oxaloacetate for form citrate (C6). An arrow shows that this can be used to build fatty acids and sterols. Citrate is converted to isocitrate (C6). Isocitrate is converted to alpha-ketoglutarate. This step builds 1 NADH/H+ from NADH and releases 1 CO2. Alpha-ketoglutarate can be used to build glutamate which can be used to build other amino acids and nucleotides. Alpha-ketoglutarate is converted to succinyl CoA (C4) by the addition of SH-CoA. This step builds one NADH/H+ from NAH+ and releases a CO2. Succinyl CoA can be used to build porphyrins, heme, and chlorophyll. Succinyl-CoA is converted to Succinate (C4). This step releases SH-CO and builds ATP or GTP from ADP or GDP and Pi. Succinate is converted to fumarate (C4). This step produces FADH2 from FAD. Fumarate is converted to malate (C4) with the addition of water. Malate is converted to oxaloacetate. This step produces NADH/H+ from NAD+. Oxoaloacetate can be used to build asparate which can be used to build nucleotides and other amino acids. Oxaloacetate can also continue in another cycle of the Kreb’s cycle
Many organisms use intermediates from the Krebs cycle, such as amino acids, fatty acids, and nucleotides, as building blocks for biosynthesis.

Key concepts and summary

  • Glycolysis is the first step in the breakdown of glucose, resulting in the formation of ATP, which is produced by substrate-level phosphorylation ; NADH; and two pyruvate molecules. Glycolysis does not use oxygen and is not oxygen dependent.
  • After glycolysis, a three-carbon pyruvate is decarboxylated to form a two-carbon acetyl group, coupled with the formation of NADH. The acetyl group is attached to a large carrier compound called coenzyme A.
  • After the transition step, coenzyme A transports the two-carbon acetyl to the Krebs cycle , where the two carbons enter the cycle. Per turn of the cycle, one acetyl group derived from glycolysis is further oxidized, producing three NADH molecules, one FADH 2 , and one ATP by substrate-level phosphorylation , and releasing two CO 2 molecules.
  • The Krebs cycle may be used for other purposes. Many of the intermediates are used to synthesize important cellular molecules, including amino acids, chlorophylls, fatty acids, and nucleotides.

True/false

Glycolysis requires oxygen or another inorganic final electron acceptor to proceed.

False

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Fill in the blank

Per turn of the Krebs cycle, one acetyl is oxidized, forming ____ CO 2 , ____ ATP, ____ NADH, and ____ FADH 2 molecules.

2; 1; 3; 1

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Most commonly, glycolysis occurs by the ________ pathway.

Embden-Meyerhof

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Short answer

What is substrate-level phosphorylation? When does it occur during the breakdown of glucose to CO 2 ?

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Why is the Krebs cycle important in both catabolism and anabolism?

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Questions & Answers

write a note of microbiology with definition
Lucky Reply
Microbiology is the study of all living organisms that are too small to be visible with the naked eye. This includes bacteria, archaea, viruses, fungi, prions, protozoa and algae, collectively known as 'microbes'.
si
write down the difference branches of microbiology
Lucky
Baccteriolog: the study of bactera. Immunology: the study of the immune system. It looks at the relationships between pathogens such as bacteria and viruses and their hosts. Mycology: the study of fungi, such as yeasts and molds. Nematology:the study of nematodes (roundworms).
Aashi
Bacteriology: the study of bacteria. Immunology: the study of the immune system. It looks at the relationships between pathogens such as bacteria and viruses and their hosts. Mycology: the study of fungi, such as yeasts and molds. Nematology: the study of nematodes (roundworms).
si
Parasitology :the study of parasites. Phycology: the study of algae. Protozoology : the study of protozoa, single-celled organisms like amoebae. Virology:the study of viruses.
Aashi
Parasitology: the study of parasites. Not all parasites are microorganisms, but many are. Protozoa and bacteria can be parasitic; the study of bacterial parasites is usually categorized as part of bacteriology. Phycology: the study of algae. Protozoology: the study of protozoa, single-celled organis
si
Virology: the study of viruses.
si
all bacterial cells have
Millie Reply
refamycin kills bacterial cell by acting on ...?
Yogesh Reply
monensin kills bacterial cell by acting on
Yogesh
genetic linkage cross over ratio ?
Yogesh
what is microbiology?
onuoha Reply
Hi!!! wants to know the meaning of microbiology
Christian Reply
Microbiology, study of microorganisms, or microbes, a diverse group of generally minute, simple life-forms that include bacteria, archaea, algae, fungi, protozoa, and viruses. The field is concerned with the structure, function, and classification of such organisms .
si
to study the life of microorganisms or microbes by knowing their characteristics types and relative species in lab
ayesha
Microbiology is simply the study of microbial world.
Shyamji
Microbiology is the branch of biology in which we study microorganisms those which cannot be seen with naked eye these are bacteria,fungi,viruses Protozoa etc.
Nisar
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Better
microbiology, is a study of microorganisms adiversegroup of generally, simple life,
Better
Thanks ever so much for the discussion.
Christian
Can anyone help with Organic Chemistry, and types?
Christian
which topic in organic chemistry
si
Introduction to organic chemistry.
Christian
Organic chemistry is the chemistry of carbon, an element that forms strong chemical bonds to other carbon atoms as well as to many other elements like hydrogen, oxygen, nitrogen, and the halogens. ... Many are composed of only carbon and hydrogen, collectively called hydrocarbons.
si
microbiology is the study of microorganisms like (bacteria ,viruses,fungi,protozoa and algae) their relationship to environment and their impact on environment .
TASAWAR
can one tell me what are reservoirs and their types with explanation.
onuoha
structure of protists
Rayyanu Reply
what is enzyme engineering
swati Reply
what is the difference between prokaryotes and eukaryotes?
Guirlaine Reply
Prokaryotes lack nucleus in their cells while eukaryotes have well defined nucleus in their cells
Ayo
Prokaryotes are organisms that consist of a single prokaryotic cell. Eukaryotic cells are found in plants, animals, fungi, and protists. They range from 10–100 μm in diameter, and their DNA is contained within a membrane-bound nucleus. Eukaryotes are organisms containing eukaryotic cells.
Pratibha
The Day Jimmy"s Boa Ate the Wash by TRINKA HAKES NOBLE pictures by STEVEN KELLOGG
Alexia Reply
cytoplasmic membrane system in eukaryotes is called
Myerlyn Reply
I study in French,but I guess it's the same: we call it as the procaryotes "cytoplasme" but it's structure "cytosquelette" hope I helped.
BENNINI
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si
hi Si Yo, yes,of course how can I help you?
BENNINI
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Irfan
hi
Ruth
ok
Francis
meaning of contagium vivum?
Royce Reply
explain transglutaminase cycle ?
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Khaliil Reply
HPV vaccine given to school children
Jayani Reply
Differentiation between electron, proton and neutron
Zainab Reply
proton .possitive charge electron . negative charge neutron . having no charge
Kifayat
proton positive charge. electron negative charge. And no charge of the neutron.
Saman
the nucleus is composed of electrons (-) charge and they turn around the Nucleon the Nucleon = neutron(no charge) + proton (+) a neutron can turn to a proton and vice versa (cuz they have the same mass=1)
BENNINI

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Source:  OpenStax, Microbiology. OpenStax CNX. Nov 01, 2016 Download for free at http://cnx.org/content/col12087/1.4
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