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The process by which a polypeptide chain assumes a large-scale, three-dimensional shape is called protein folding . Folded proteins that are fully functional in their normal biological role are said to possess a native structure . When a protein loses its three-dimensional shape, it may no longer be functional. These unfolded proteins are denatured . Denaturation implies the loss of the secondary structure and tertiary structure (and, if present, the quaternary structure) without the loss of the primary structure.

Some proteins are assemblies of several separate polypeptide s, also known as protein subunit s. These proteins function adequately only when all subunits are present and appropriately configured. The interactions that hold these subunits together constitute the quaternary structure of the protein. The overall quaternary structure is stabilized by relatively weak interactions. Hemoglobin, for example, has a quaternary structure of four globular protein subunits: two α and two β polypeptides, each one containing an iron-based heme ( [link] ).

Another important class of proteins is the conjugated proteins that have a nonprotein portion. If the conjugated protein has a carbohydrate attached, it is called a glycoprotein . If it has a lipid attached, it is called a lipoprotein . These proteins are important components of membranes. [link] summarizes the four levels of protein structure.

The primary protein structure is a chain of amino acids that makes up the protein. The image is a chain of circles (each circle is an amino acid). One end of the chain is the free amino group or N-terminus. The other end of the chain is the free carboxyl group or C-terminus. A drawing of a single amino acid shows a carbon with an H, an R group, a COOH (acidic carboxyl group) and an NH2 (amino group).
The primary structure of a protein is the sequence of amino acids. (credit: modification of work by National Human Genome Research Institute)
The secondary structure of a protein may be an α-helix or a β-pleated sheet, or both. A chain of spheres forms a spiral labeled alpha-helix. This chain also forms a ribbon that folds back and forth; this is labeled beta-pleated sheet. Closeups show that hydrogen bonds (dotted lines) between amino acids hold together these shapes.
The secondary structure of a protein may be an α-helix or a β-pleated sheet, or both.
A long ribbon labeled polypeptide backbone. Loops of the ribbon are held in place by various types of chemical reactions. An ionic bond is then a positively charged amino acid and a negatively charged amino acid are attracted to each other. Hydrophobic interactions are when hydrophobic amino acids (containing only carbons and hydrogens) are clustered together. A disulfide linkage is when a sulfur of one amino acid is covalently bound to the sulfur of another amino acid. A hydrogen bond is when two polar amino acids are attracted to each other.
The tertiary structure of proteins is determined by a variety of attractive forces, including hydrophobic interactions, ionic bonding, hydrogen bonding, and disulfide linkages.
A complex spherical shape made of ribbons that are coiled and wound around each other. There are 4 large regions (each made from a separate ribbon) – alpha 1, alpha 2, beta 1, beta 2.  There are also red spheres attached to each ribbon; these are labeled heme group.
A hemoglobin molecule has two α and two β polypeptides together with four heme groups.
Primary protein structure: sequence of a chain of amino acids. This is shown as a chain of circles. Secondary protein structure: local folding of the polypeptide chain into helices or sheets. This is shown as a spiral labeled alpha-helix and a folded sheet labeled beta-pleated sheet. Tertiary protein structure: three-dimensional folding pattern of a protein due to side chain interactions. This is shown as a complex 3-D shape made of alpha helices and beta pleated sheets. Quaternary protein structure: protein consisting of more than one amino acid chain. This is shown as 2 complex structures similar to that seen at the tertiary level.
Protein structure has four levels of organization. (credit: modification of work by National Human Genome Research Institute)
  • What can happen if a protein’s primary, secondary, tertiary, or quaternary structure is changed?

Primary structure, dysfunctional proteins, and cystic fibrosis

Proteins associated with biological membranes are classified as extrinsic or intrinsic. Extrinsic proteins, also called peripheral proteins, are loosely associated with one side of the membrane. Intrinsic proteins, or integral proteins, are embedded in the membrane and often function as part of transport systems as transmembrane proteins. Cystic fibrosis (CF) is a human genetic disorder caused by a change in the transmembrane protein. It affects mostly the lungs but may also affect the pancreas, liver, kidneys, and intestine. CF is caused by a loss of the amino acid phenylalanine in a cystic fibrosis transmembrane protein (CFTR). The loss of one amino acid changes the primary structure of a protein that normally helps transport salt and water in and out of cells ( [link] ).

The change in the primary structure prevents the protein from functioning properly, which causes the body to produce unusually thick mucus that clogs the lungs and leads to the accumulation of sticky mucus. The mucus obstructs the pancreas and stops natural enzymes from helping the body break down food and absorb vital nutrients.

In the lungs of individuals with cystic fibrosis, the altered mucus provides an environment where bacteria can thrive. This colonization leads to the formation of biofilms in the small airways of the lungs. The most common pathogens found in the lungs of patients with cystic fibrosis are Pseudomonas aeruginosa ( [link] ) and Burkholderia cepacia . Pseudomonas differentiates within the biofilm in the lung and forms large colonies, called “mucoid” Pseudomonas . The colonies have a unique pigmentation that shows up in laboratory tests ( [link] ) and provides physicians with the first clue that the patient has CF (such colonies are rare in healthy individuals).

A drawing of a phospholipid bilayer in the center with two protein channels. One is open and lets Cl- flow out of the cell. The other is blocked by a mucus blockage on the outside of the cell; Cl- ions can’t flow through this channel.
The normal CFTR protein is a channel protein that helps salt (sodium chloride) move in and out of cells.
a) a micrograph of rod shaped cells. B) An agar plate with a green pigmented colonies; this green pigment is spreading past the edge of the colonies.
(a) A scanning electron micrograph shows the opportunistic bacterium Pseudomonas aeruginosa . (b) Pigment-producing P. aeruginosa on cetrimide agar shows the green pigment called pyocyanin. (credit a: modification of work by the Centers for Disease Control and Prevention)

Key concepts and summary

  • Amino acids are small molecules essential to all life. Each has an α carbon to which a hydrogen atom, carboxyl group, and amine group are bonded. The fourth bonded group, represented by R, varies in chemical composition, size, polarity, and charge among different amino acids, providing variation in properties.
  • Peptides are polymers formed by the linkage of amino acids via dehydration synthesis. The bonds between the linked amino acids are called peptide bonds. The number of amino acids linked together may vary from a few to many.
  • Proteins are polymers formed by the linkage of a very large number of amino acids. They perform many important functions in a cell, serving as nutrients and enzymes; storage molecules for carbon, nitrogen, and energy; and structural components.
  • The structure of a protein is a critical determinant of its function and is described by a graduated classification: primary , secondary , tertiary , and quaternary . The native structure of a protein may be disrupted by denaturation , resulting in loss of its higher-order structure and its biological function.
  • Some proteins are formed by several separate protein subunits, the interaction of these subunits composing the quaternary structure of the protein complex.
  • Conjugated proteins have a nonpolypeptide portion that can be a carbohydrate (forming a glycoprotein ) or a lipid fraction (forming a lipoprotein ). These proteins are important components of membranes.

Fill in the blank

The sequence of amino acids in a protein is called its __________.

Primary structure

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Denaturation implies the loss of the __________ and __________ structures without the loss of the __________ structure.

secondary, tertiary, primary

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True/false

A change in one amino acid in a protein sequence always results in a loss of function.

False

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Questions & Answers

what is the size of virus
Beatrice Reply
What is the difference between TVC and Bioburden test
Mohamed
?
Mohamed
structure of bacteria and 10 types
Jennifer Reply
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what is endomembrane system
Ikpi Reply
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Ikpi
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Industrial microbiology mcq
mohamed
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Blessing
life arises from living matter or live organism.
Swami Reply
yes
sildra
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sildra
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Manya
living maters made by non living matters
sildra
non living matters like stones? rocks?
Manya
eno
sildra
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sildra
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Manya
cells are made by C N O minerals etc
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sildra
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Manya
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Hi
Maruf
Family kindly help me with this question? 1) Shortlist the configurative measurements of the following human anatomical ranges of÷ - Blood ( haemeglobin) in both male and female - Haematocytes in both male and female - Hepatocytes in both male and female - Lymphocyte / T. Lymphocytes in both male
Gifted
My names are Gift Mwale and am a Zambian. Kindly help me with this research which goes like this... 1) Shortlist the configurative measurements of the following human anatomical ranges of ÷ - Blood ( haemeglobin) in both male and female - Hepatocytes in both male and female - Haematocytes in both
Gifted
please what is the full meaning for TCDS
UDEME
from a single cell
Freedom
tcds means transcranial direct current stimulation...in this small electric currents are given to brain( specific parts) to help increase brain performance or to help with depression.. current should be in range 0.5-2.0mA
Manya
what's underlying disease relating unsanitary diet microorganism with the highest rate of epidemology solution and efficacy leading molecules elucidated structural solutions
feven
please can anybody talk about brain tumour and its cure.
BELLO Reply
enlargement of the thyroid gland resulting in over production of hormone.
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What can u say on Thyroid Cancer?
Abdulkareem
Please, talk about the thyroid cancer.
BELLO
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is unit of life
Kamaluddeen
Ok
mohamed
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Cynthia Reply
I want to know the biochemical composition of bacteria
Josh Reply
It contains peptidoglcon, DNA nd RNA
Asiya
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Ikpi
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Momina Reply
disease due to __________ abnormalities are termed primary immunodeficiencies
Tayee Reply
Some primary immunodeficiencies are due to a defect of a single cellular or humoral component of the immune system.
Prince
Examples of primary immunodeficiencies include: chronic granulomatous disease, X-linked agammaglobulinemia, selective IgA deficiency etc
Prince
thank you
Nana
explain microbial mutation
Emerald
what is mutation
Cynthia Reply
alteration in genetic makeup
UDEME

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Source:  OpenStax, Microbiology. OpenStax CNX. Nov 01, 2016 Download for free at http://cnx.org/content/col12087/1.4
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