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A nucleotide with a sugar in the center, the sugar is a pentagon with oxygen at the top point. Moving clockwise the carbons are numbered 1 (upper right) 2, (bottom right), 3 (bottom left), 4 (upper left) and 5 (projecting from carbon 4. Attached to carbon 1 is a base (thymine). Attached to carbon 5 is a phosphate group. Another nucleotide below has the same structure (other than that the base is C rather than T). The phosphate group attached to carbon 5 of the lower nucleotide is also attached to carbon 3 of the upper nucleotide. The lower nucleotide has an OH attached to its carbon 3. Another nucleotide has the OH group of its phosphate highlighted. A phospodiester bond forms when water is removed from these two OH groups. This results in a bond forming between carbon 3 of the nucleotide in the chain and the phosphate group attached to carbon 5 of the new nucleotide. This is called a phosphodiester bond.
Phosphodiester bonds form between the phosphate group attached to the 5ʹ carbon of one nucleotide and the hydroxyl group of the 3ʹ carbon in the next nucleotide, bringing about polymerization of nucleotides in to nucleic acid strands. Note the 5ʹ and 3ʹ ends of this nucleic acid strand.
  • What is meant by the 5ʹ and 3ʹ ends of a nucleic acid strand?

Discovering the double helix

By the early 1950s, considerable evidence had accumulated indicating that DNA was the genetic material of cells, and now the race was on to discover its three-dimensional structure. Around this time, Austrian biochemist Erwin Chargaff N. Kresge et al. “Chargaff's Rules: The Work of Erwin Chargaff.” Journal of Biological Chemistry 280 (2005):e21. (1905–2002) examined the content of DNA in different species and discovered that adenine, thymine, guanine, and cytosine were not found in equal quantities, and that it varied from species to species, but not between individuals of the same species. He found that the amount of adenine was very close to equaling the amount of thymine, and the amount of cytosine was very close to equaling the amount of guanine, or A = T and G = C. These relationships are also known as Chargaff’s rules .

Other scientists were also actively exploring this field during the mid-20th century. In 1952, American scientist Linus Pauling (1901–1994) was the world’s leading structural chemist and odds-on favorite to solve the structure of DNA. Pauling had earlier discovered the structure of protein α helices, using X-ray diffraction , and, based upon X-ray diffraction images of DNA made in his laboratory, he proposed a triple-stranded model of DNA. L. Pauling, “A Proposed Structure for the Nucleic Acids.” Proceedings of the National Academy of Science of the United States of America 39 no. 2 (1953):84–97. At the same time, British researchers Rosalind Franklin (1920–1958) and her graduate student R.G. Gosling were also using X-ray diffraction to understand the structure of DNA ( [link] ). It was Franklin’s scientific expertise that resulted in the production of more well-defined X-ray diffraction images of DNA that would clearly show the overall double-helix structure of DNA.

The X-ray diffraction pattern of DNA shows its helical nature. A photograph of a fuzzy spiral with fuzzy black dots forming a fuzzy figure 8.
The X-ray diffraction pattern of DNA shows its helical nature. (credit: National Institutes of Health)

James Watson (1928–), an American scientist, and Francis Crick (1916–2004), a British scientist, were working together in the 1950s to discover DNA’s structure. They used Chargaff’s rules and Franklin and Wilkins X-ray diffraction images of DNA fibers to piece together the purine-pyrimidine pairing of the double helical DNA molecule ( [link] ). In April 1953, Watson and Crick published their model of the DNA double helix in Nature . J.D. Watson, F.H.C. Crick. “A Structure for Deoxyribose Nucleic Acid.” Nature 171 no. 4356 (1953):737–738. The same issue additionally included papers by Wilkins and colleagues, M.H.F. Wilkins et al. “Molecular Structure of Deoxypentose Nucleic Acids.” Nature 171 no. 4356 (1953):738–740. as well as by Franklin and Gosling , R. Franklin, R.G. Gosling. “Molecular Configuration in Sodium Thymonucleate.” Nature 171 no. 4356 (1953):740–741. each describing different aspects of the molecular structure of DNA. In 1962, James Watson, Francis Crick, and Maurice Wilkins were awarded the Nobel Prize in Physiology and Medicine. Unfortunately, by then Franklin had died, and Nobel prizes at the time were not awarded posthumously. Work continued, however, on learning about the structure of DNA. In 1973, Alexander Rich (1924–2015) and colleagues were able to analyze DNA crystals to confirm and further elucidate DNA structure. R.O. Day et al. “A Crystalline Fragment of the Double Helix: The Structure of the Dinucleoside Phosphate Guanylyl-3',5'-Cytidine.” Proceedings of the National Academy of Sciences of the United States of America 70 no. 3 (1973):849–853.

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Source:  OpenStax, Microbiology. OpenStax CNX. Nov 01, 2016 Download for free at http://cnx.org/content/col12087/1.4
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