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Speed of FFTs with vectorized loops

Appendix 3 contains listings of FFTs with vectorized loops. The input and output of the FFTs is in interleaved format, but thecomputation of the inner loops is performed on split format data. At the leaves of the transform there are no loops, so the computation falls back to scalararithmetic.

[link] summarizes the performance of the listings in Appendix 3 . Interestingly, the radix-2 FFT is faster than both the conjugate-pair and ordinary split-radix algorithms until size 4096transforms, and this is due to the conjugate-pair and split-radix algorithms being more complicated at the leaves of the computation. The radix-2 algorithmonly has to deal with one size of sub-transform at the leaves, but the split-radix algorithms have to handle special cases for two sizes, andfurthermore, a larger proportion of the computation takes place at the leaves with the split-radix algorithms. The conjugate-pair algorithm is again slowerthan the ordinary split-radix algorithm, which can (again) be attributed to the compiler's relatively degenerate code output when computing complexmultiplication with a conjugate.

Overall, performance improves with the use of explicit vector parallelism, but still falls short of the state of the art. The next section characterizes the remaining performance bottlenecks.

The performance bottleneck

Memory access pattern of straight line blocks of code in a size 64 radix-2 FFT

The memory access patterns of an FFT are the biggest obstacle to performance on modern microprocessors. To illustrate this point, [link] visualizes the memory accesses of each straight line block of code in a size 64 radix-2 DIT FFT (the source code of whichis provided in Appendix 3 ).

The vertical axis of [link] is memory. Because the diagram depicts a size 64 transform there are 64 rows, each corresponding to a complex word in memory. Because thetransform is out-of-place, there are input and output arrays for the data. The input array contains the data “in time”, while the output array contains the result “infrequency”. Rather than show 128 rows – 64 for the input and 64 for the output – the input array's address space has been aliased over the output array'saddress space, where the orange code indicates an access to the input array and the green and blue codes for accesses to the output array.

Each column along the horizontal axis represents the memory accesses sampled at each kernel (i.e., butterfly) of the computation, which are all straight line blocks of code. The first column shows two orange and oneblue memory operations, and these correspond to a radix-2 computation at the leaves reading two elements from the input data, and writing twoelements into the output array. The second column shows a similar radix-2 computation at the leaves: two elements of data are read from the input at addresses 18 and 48, the size 2DFT computed, and the results written to the output array at addresses 2 and 3.

There are columns that do not indicate accesses to the input array, and these are the blocks that are not at the leaves of the computation. They load data from somelocations in the output, performing the computation, and store the data back to the same locations in the output array.

There are two problems that [link] illustrates. The first is that the accesses to the input array – the samples “in time" – are indeed very decimated, as might be expected with a decimation-in-time algorithm. Second, it can be observed that the leaves of the computation are rather inefficient, because there are large numbers ofstraight line blocks of code performing scalar memory accesses, and no loops of more than a few iterations (i.e., the leaves of the computation are not taking advantage of the machine's SIMD capability).

[link] in the previous section showed that the vectorized radix-2 FFT was faster than the split-radix algorithms up to size4096 transforms; a comparison between [link] and [link] helps explain this phenomenon. The split-radix algorithm spends more time computing the leaves of the computation (blue), so despite thesplit-radix algorithms being more efficient in the inner loops of SIMD computation, the performance has been held back by higher proportion of verysmall straight line blocks of code (corresponding to sub-transforms smaller than size 4) performing scalar memory accesses at the leaves of thecomputation.

Because the addresses of memory operations at the leaves are a function of variables passed on the stack, it is very difficult for a hardware prefetchunit to keep these leaves supplied with data, and thus memory latency becomes an issue. In later chapters, it is shown that increasing the size of the basecases at the leaves improves performance.

Memory access pattern of straight line blocks of code in a size 64 split-radix FFT

Questions & Answers

where we get a research paper on Nano chemistry....?
Maira Reply
nanopartical of organic/inorganic / physical chemistry , pdf / thesis / review
Ali
what are the products of Nano chemistry?
Maira Reply
There are lots of products of nano chemistry... Like nano coatings.....carbon fiber.. And lots of others..
learn
Even nanotechnology is pretty much all about chemistry... Its the chemistry on quantum or atomic level
learn
Google
da
no nanotechnology is also a part of physics and maths it requires angle formulas and some pressure regarding concepts
Bhagvanji
hey
Giriraj
Preparation and Applications of Nanomaterial for Drug Delivery
Hafiz Reply
revolt
da
Application of nanotechnology in medicine
what is variations in raman spectra for nanomaterials
Jyoti Reply
ya I also want to know the raman spectra
Bhagvanji
I only see partial conversation and what's the question here!
Crow Reply
what about nanotechnology for water purification
RAW Reply
please someone correct me if I'm wrong but I think one can use nanoparticles, specially silver nanoparticles for water treatment.
Damian
yes that's correct
Professor
I think
Professor
Nasa has use it in the 60's, copper as water purification in the moon travel.
Alexandre
nanocopper obvius
Alexandre
what is the stm
Brian Reply
is there industrial application of fullrenes. What is the method to prepare fullrene on large scale.?
Rafiq
industrial application...? mmm I think on the medical side as drug carrier, but you should go deeper on your research, I may be wrong
Damian
How we are making nano material?
LITNING Reply
what is a peer
LITNING Reply
What is meant by 'nano scale'?
LITNING Reply
What is STMs full form?
LITNING
scanning tunneling microscope
Sahil
how nano science is used for hydrophobicity
Santosh
Do u think that Graphene and Fullrene fiber can be used to make Air Plane body structure the lightest and strongest. Rafiq
Rafiq
what is differents between GO and RGO?
Mahi
what is simplest way to understand the applications of nano robots used to detect the cancer affected cell of human body.? How this robot is carried to required site of body cell.? what will be the carrier material and how can be detected that correct delivery of drug is done Rafiq
Rafiq
if virus is killing to make ARTIFICIAL DNA OF GRAPHENE FOR KILLED THE VIRUS .THIS IS OUR ASSUMPTION
Anam
analytical skills graphene is prepared to kill any type viruses .
Anam
Any one who tell me about Preparation and application of Nanomaterial for drug Delivery
Hafiz
what is Nano technology ?
Bob Reply
write examples of Nano molecule?
Bob
The nanotechnology is as new science, to scale nanometric
brayan
nanotechnology is the study, desing, synthesis, manipulation and application of materials and functional systems through control of matter at nanoscale
Damian
Is there any normative that regulates the use of silver nanoparticles?
Damian Reply
what king of growth are you checking .?
Renato
What fields keep nano created devices from performing or assimulating ? Magnetic fields ? Are do they assimilate ?
Stoney Reply
why we need to study biomolecules, molecular biology in nanotechnology?
Adin Reply
?
Kyle
yes I'm doing my masters in nanotechnology, we are being studying all these domains as well..
Adin
why?
Adin
what school?
Kyle
biomolecules are e building blocks of every organics and inorganic materials.
Joe
how did you get the value of 2000N.What calculations are needed to arrive at it
Smarajit Reply
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Source:  OpenStax, Computing the fast fourier transform on simd microprocessors. OpenStax CNX. Jul 15, 2012 Download for free at http://cnx.org/content/col11438/1.2
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