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Many enzymes don’t work optimally, or even at all, unless bound to other specific non-protein helper molecules, either temporarily through ionic or hydrogen bonds or permanently through stronger covalent bonds. Two types of helper molecules are cofactors and coenzymes . Binding to these molecules promotes optimal conformation and function for their respective enzymes. Cofactors are inorganic ions such as iron (Fe++) and magnesium (Mg++). One example of an enzyme that requires a metal ion as a cofactor is the enzyme that builds DNA molecules, DNA polymerase, which requires bound zinc ion (Zn++) to function. Coenzymes are organic helper molecules, with a basic atomic structure made up of carbon and hydrogen, which are required for enzyme action. The most common sources of coenzymes are dietary vitamins ( [link] ). Some vitamins are precursors to coenzymes and others act directly as coenzymes. Vitamin C is a coenzyme for multiple enzymes that take part in building the important connective tissue component, collagen. An important step in the breakdown of glucose to yield energy is catalysis by a multi-enzyme complex called pyruvate dehydrogenase. Pyruvate dehydrogenase is a complex of several enzymes that actually requires one cofactor (a magnesium ion) and five different organic coenzymes to catalyze its specific chemical reaction. Therefore, enzyme function is, in part, regulated by an abundance of various cofactors and coenzymes, which are supplied primarily by the diets of most organisms.

Shown are the molecular structures for Vitamin A, folic acid, Vitamin B1, Vitamin C, Vitamin B2, Vitamin D2, Vitamin B6, and Vitamin E.
Vitamins are important coenzymes or precursors of coenzymes, and are required for enzymes to function properly. Multivitamin capsules usually contain mixtures of all the vitamins at different percentages.

Enzyme compartmentalization

In eukaryotic cells, molecules such as enzymes are usually compartmentalized into different organelles. This allows for yet another level of regulation of enzyme activity. Enzymes required only for certain cellular processes can be housed separately along with their substrates, allowing for more efficient chemical reactions. Examples of this sort of enzyme regulation based on location and proximity include the enzymes involved in the latter stages of cellular respiration, which take place exclusively in the mitochondria, and the enzymes involved in the digestion of cellular debris and foreign materials, located within lysosomes.

Feedback inhibition in metabolic pathways

Molecules can regulate enzyme function in many ways. A major question remains, however: What are these molecules and where do they come from? Some are cofactors and coenzymes, ions, and organic molecules, as you’ve learned. What other molecules in the cell provide enzymatic regulation, such as allosteric modulation, and competitive and noncompetitive inhibition? The answer is that a wide variety of molecules can perform these roles. Some of these molecules include pharmaceutical and non-pharmaceutical drugs, toxins, and poisons from the environment. Perhaps the most relevant sources of enzyme regulatory molecules, with respect to cellular metabolism, are the products of the cellular metabolic reactions themselves. In a most efficient and elegant way, cells have evolved to use the products of their own reactions for feedback inhibition of enzyme activity. Feedback inhibition involves the use of a reaction product to regulate its own further production ( [link] ). The cell responds to the abundance of specific products by slowing down production during anabolic or catabolic reactions. Such reaction products may inhibit the enzymes that catalyzed their production through the mechanisms described above.

This diagram shows a metabolic pathway in which three enzymes convert a substrate, in three steps, into a final product. The final product inhibits the first enzyme in the pathway.
Metabolic pathways are a series of reactions catalyzed by multiple enzymes. Feedback inhibition, where the end product of the pathway inhibits an upstream step, is an important regulatory mechanism in cells.

The production of both amino acids and nucleotides is controlled through feedback inhibition. Additionally, ATP is an allosteric regulator of some of the enzymes involved in the catabolic breakdown of sugar, the process that produces ATP. In this way, when ATP is abundant, the cell can prevent its further production. Remember that ATP is an unstable molecule that can spontaneously dissociate into ADP. If too much ATP were present in a cell, much of it would go to waste. On the other hand, ADP serves as a positive allosteric regulator (an allosteric activator) for some of the same enzymes that are inhibited by ATP. Thus, when relative levels of ADP are high compared to ATP, the cell is triggered to produce more ATP through the catabolism of sugar.

Section summary

Enzymes are chemical catalysts that accelerate chemical reactions at physiological temperatures by lowering their activation energy. Enzymes are usually proteins consisting of one or more polypeptide chains. Enzymes have an active site that provides a unique chemical environment, made up of certain amino acid R groups (residues). This unique environment is perfectly suited to convert particular chemical reactants for that enzyme, called substrates, into unstable intermediates called transition states. Enzymes and substrates are thought to bind with an induced fit, which means that enzymes undergo slight conformational adjustments upon substrate contact, leading to full, optimal binding. Enzymes bind to substrates and catalyze reactions in four different ways: bringing substrates together in an optimal orientation, compromising the bond structures of substrates so that bonds can be more easily broken, providing optimal environmental conditions for a reaction to occur, or participating directly in their chemical reaction by forming transient covalent bonds with the substrates.

Enzyme action must be regulated so that in a given cell at a given time, the desired reactions are being catalyzed and the undesired reactions are not. Enzymes are regulated by cellular conditions, such as temperature and pH. They are also regulated through their location within a cell, sometimes being compartmentalized so that they can only catalyze reactions under certain circumstances. Inhibition and activation of enzymes via other molecules are other important ways that enzymes are regulated. Inhibitors can act competitively, noncompetitively, or allosterically; noncompetitive inhibitors are usually allosteric. Activators can also enhance the function of enzymes allosterically. The most common method by which cells regulate the enzymes in metabolic pathways is through feedback inhibition. During feedback inhibition, the products of a metabolic pathway serve as inhibitors (usually allosteric) of one or more of the enzymes (usually the first committed enzyme of the pathway) involved in the pathway that produces them.

Questions & Answers

give me somes of examples.
Manu Reply
give example of what.
Ante
example of what
Elizabeth
what are chromosomes?
Ante
what is Biology
Darkoa
Ecology is the study of
Abdul Reply
Ecology is the study of the interaction of organism in each other and their environment.
Ante
Ecology is the study of the interaction of organism in each other and their environment
Everlove
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Great
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Ante
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Ante
a geographical area with dinstic species
Francis
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Francis
characteristics of living things
Jane Reply
excretion, movement, sensitivity, reproduction,growth, respiration,nutrition
Estel
what are there function
Ante
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Ante
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Ante
sexual reproduction and asexual reproduction
Abdul
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Manu
Hi
Olufunmilokun
What is light independent reaction
Benjamin Reply
correct word or phrase. ______A____ uses carbon dioxide and _____B______ to make sugar during______C______. _____D______ traps light energy during this process. *
Andrea Reply
A_plant ,B_water,C_photosynthesis,D_chlorophyll
Abdul
Plant,sunlight,photosynthesis
Olufunmilokun
by which of the following feature c3 and c4 plant similar A .enzyme used to fix carbon dioxide B.cell where calvin cycle takes place C.cell where carbon dioxide fixation takes place
Kaleab Reply
correct word or phrase. ______A____ uses carbon dioxide and _____B______ to make sugar during______C______. _____D______ traps light energy during this process. *
Andrea
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Bizone Reply
study of organisms
Aurelia
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Lamina Reply
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Dora Reply
Buttress root are wide large root
Iyabo
Buttress root/roots are thick roots that emerge out form the base of a large canopy
Musoke
From the base of a large canopy
Musoke
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Jiboh Reply
Biology is the study of structure and growth of living things and organisms within their biography
Musoke
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World Reply
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Joy Reply
Movement Respiration Nutrition Irritability or sensitivity Growth Excretion Reproduction Adaptation Competition Death or Life Span
Emmanuel
Respiration Irritability Movement Excretion Nutrition Growth Reproduction
Amponsah
movement respiration nutrition irritability growth excretion reproduction death
Elizabeth
what is the function of medulla oblongata
mbalenhle Reply
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Chionye
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Dauda Reply
is a branch of science which deals with the study of living thing
sheka
thanks
Dauda
Biology is got from two main words: bios: means life and Logos: means knowledge therefore, biology is a branch of science that deals with knowledge, life and functioning of living things.
Musoke
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Seldam
Responds to stimuli
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Biology is an aspect of science that deals with the. study of living organisms
Amponsah

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Source:  OpenStax, Biology. OpenStax CNX. Feb 29, 2016 Download for free at http://cnx.org/content/col11448/1.10
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