# Dynamics of a network of single compartmental cells  (Page 2/2)

 Page 2 / 2
${R}_{j}\left(t\right)=\sum _{k=1}^{♯{\mathbf{t}}_{\mathbf{j}}}\delta \left(t-{t}_{j}\left(k\right)\right).$

We illustrate the dynamics of the synaptic conductance in a very simple example presented in Figure 1.

## External current

Similar to the network current, the external current for cell $i$ is given by

${I}_{i}^{ext}\left(t\right)={g}_{i}^{ext}\left(t\right)\left({E}^{ext}-{V}_{i}\left(t\right)\right),$

where

$\frac{d{g}_{i}^{exp}\left(t\right)}{dt}=-\frac{{g}_{i}^{ext}\left(t\right)}{{\tau }^{ext}}+{G}^{ext}{R}_{i}^{ext}\left(t\right),\phantom{\rule{4pt}{0ex}}t>0.$

We assume that all external sources are excitatory and have the same reversal potential, ${E}^{ext}$ . This assumption allows us to model the sum of the effects of all external sources as a single effective excitatory synapse with peak conductance ${G}^{ext}$ and decay constant ${\tau }^{ext}$ . The external firing rate, ${R}_{i}^{ext}$ , now represents the sum of the firing rates of all external sources. Because the external sources have no input in this model, we must generate their spike trains. To meet this end, we set ${R}_{i}^{ext}$ to be a Poisson spike train with mean rate ${f}_{i}^{ext}$ .

## Model of a hypercolumn in primary visual cortex

We now apply this network model to a network of cells found in a hypercolumn in primary visual cortex. We divide the network neurons into two types: excitatory and inhibitory. Each cell is selective to the orientation of the visual stimulus and is parameterized by its preferred orientation (PO). For excitatory neurons, the PO for cell $i$ is given by ${\theta }_{i}=-\frac{\pi }{2}+i\frac{\pi }{{N}_{ex}}$ , and the reversal potential is uniform and denoted ${E}_{ex}$ . The PO and reversal potential for inhibitory neurons are defined analogously.

The peak conductance at a network synapse is dependent on the PO of the pre- and postsynaptic neurons. If cell $j$ is excitatory, then the peak conductance at the excitatory synapse from cell $j$ to cell $i$ is given by

${G}_{ij}\left(|{\theta }_{i}-{\theta }_{j}|\right)=\frac{{\overline{G}}_{ex}}{{\lambda }_{ex}}exp\left(|{\theta }_{i}-{\theta }_{j}|/{\lambda }_{ex}\right),$

where ${\lambda }_{ex}$ is the excitatory decay constant in space. The peak conductance at inhibitory synapses is defined analogously. We assume that no cell synapses onto itself, or ${G}_{ii}=0\phantom{\rule{4pt}{0ex}}\forall i$ , and that no inhibitory to inhibitory synapses exist. Figure 2 shows the network architecture for a small network.

Excitatory neurons in the lateral geniculate nucleus (LGN) are the external sources for our network in the primary visual cortex. The total mean firing rate of all external sources to cell $i$ is given by

${f}_{LGN}\left(|{\theta }_{i}-{\theta }_{0}|\right)={\overline{f}}_{LGN}C\left[\left(1-ϵ\right)+ϵcos\left(2\left({\theta }_{i}-{\theta }_{0}\right)\right)\right],$

where ${\theta }_{i}$ is the PO of cell $i$ , and ${\theta }_{0}$ is the orientation of the stimulus. The parameter $C$ dictates the stimulus contrast, and the parameter $ϵ$ measures the degree of tuning of the LGN input. The maximum firing rate, ${\overline{f}}_{LGN}$ , is reached if $C=0$ and ${\theta }_{i}={\theta }_{0}$ . Note that if $ϵ=0$ , the LGN input is untuned, and if $ϵ=0.5$ , the LGN input vanishes when $|{\theta }_{i}-{\theta }_{0}|=\frac{\pi }{2}$ .

To ensure that we have understood and implemented the model as Shriki intended, we now test our model by reproducing the conductance-based portion of Figure 3 in Shriki's paper   [link] . For this simple example, the network in the primary visual cortex consists of $N$ excitatory, homogeneous neurons. The homogeneity of the network means that each neuron is connected to every other neuron with peak conductance $G$ . Also, each neuron has the same PO, implying that the mean firing rate, ${f}_{LGN}$ , is uniform across all neurons. To model this, we generate $N$ uncorrelated Poisson spike trains with mean firing rate ${f}_{LGN}$ . We now implement the model for this homogeneous network to show how the firing rate depends on the peak synaptic conductance, $G.$ Our results are shown in Figure 3.

 ${N}_{ex}$ 1000 ${G}^{ext}$ 0.0035 $mS/c{m}^{2}$ ${f}_{LGN}$ 1570 Hz ${\lambda }_{ex}$ 5 rad ${\tau }_{ex}$ 5 ms ${\tau }^{ext}$ 5 ms ${V}_{rest}$ -73 mV ${C}_{m}$ 1 $\mu F/c{m}^{2}$ ${E}_{L}$ -65 mV

## Conclusion

We have shown how to extend the model of the isolated single compartmental neuron to model a network of neurons receiving external input. Using this model, we have simulated the dynamics of a network of cells in the primary visual cortex receiving input from the LGN. For an excitatory, homogeneous network, we have shown the relationship between the firing rate of the network and the peak synaptic conductance at the network synapses, reproducing results obtained by Shriki et al. The next step needing to be taken for this VIGRE project is to implement the rate equations that are the central focus of the Shriki paper. We could then compare the results obtained from the rate model to those obtained in the conductance-based model presented here and determine if the rate equations are a good approximation for the conductance-based model.

What fields keep nano created devices from performing or assimulating ? Magnetic fields ? Are do they assimilate ?
why we need to study biomolecules, molecular biology in nanotechnology?
?
Kyle
yes I'm doing my masters in nanotechnology, we are being studying all these domains as well..
why?
what school?
Kyle
biomolecules are e building blocks of every organics and inorganic materials.
Joe
anyone know any internet site where one can find nanotechnology papers?
research.net
kanaga
sciencedirect big data base
Ernesto
Introduction about quantum dots in nanotechnology
what does nano mean?
nano basically means 10^(-9). nanometer is a unit to measure length.
Bharti
do you think it's worthwhile in the long term to study the effects and possibilities of nanotechnology on viral treatment?
absolutely yes
Daniel
how to know photocatalytic properties of tio2 nanoparticles...what to do now
it is a goid question and i want to know the answer as well
Maciej
Abigail
for teaching engĺish at school how nano technology help us
Anassong
Do somebody tell me a best nano engineering book for beginners?
there is no specific books for beginners but there is book called principle of nanotechnology
NANO
what is fullerene does it is used to make bukky balls
are you nano engineer ?
s.
fullerene is a bucky ball aka Carbon 60 molecule. It was name by the architect Fuller. He design the geodesic dome. it resembles a soccer ball.
Tarell
what is the actual application of fullerenes nowadays?
Damian
That is a great question Damian. best way to answer that question is to Google it. there are hundreds of applications for buck minister fullerenes, from medical to aerospace. you can also find plenty of research papers that will give you great detail on the potential applications of fullerenes.
Tarell
what is the Synthesis, properties,and applications of carbon nano chemistry
Mostly, they use nano carbon for electronics and for materials to be strengthened.
Virgil
is Bucky paper clear?
CYNTHIA
carbon nanotubes has various application in fuel cells membrane, current research on cancer drug,and in electronics MEMS and NEMS etc
NANO
so some one know about replacing silicon atom with phosphorous in semiconductors device?
Yeah, it is a pain to say the least. You basically have to heat the substarte up to around 1000 degrees celcius then pass phosphene gas over top of it, which is explosive and toxic by the way, under very low pressure.
Harper
Do you know which machine is used to that process?
s.
how to fabricate graphene ink ?
for screen printed electrodes ?
SUYASH
What is lattice structure?
of graphene you mean?
Ebrahim
or in general
Ebrahim
in general
s.
Graphene has a hexagonal structure
tahir
On having this app for quite a bit time, Haven't realised there's a chat room in it.
Cied
what is biological synthesis of nanoparticles
what's the easiest and fastest way to the synthesize AgNP?
China
Cied
Got questions? Join the online conversation and get instant answers!