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3.2. tools and platforms

The database management system chosen for the REKn prototype was PostgreSQL. As a standard system commonly used by the academic community, PostgreSQL allows for future collaboration with other researchers and integration with other projects. PostgreSQL’s open source status caters to the possibility of writing custom functions and indexes that cannot be supplied by other means. Moreover, PostgreSQL offers scaling and clustering of database systems and the data in the systems. Redundancy is also possible with PostgreSQL—that is, if one server in a cluster crashes, the others will continue processing queries and data uninterrupted.

A similar rationale dictated writing the web service in PHP, since PHP is a commonly used and well-understood framework for database access via the Internet, in addition to being open source. The data-entry application is likewise based on Perl scripts to use the web service as a database access proxy, since in addition to being open source software, Perl is well suited for string processing.

3.3. gathering primary and secondary materials

The gathering of primary materials for the knowledgebase was initially accomplished by pulling down content from open-access archives of Renaissance texts, and by requesting materials from various partnerships (researchers, publishers, scholarly centers) interested in the project. These materials included a total of some 12,830 texts in the public domain or otherwise generously donated by EEBO-TCP (9,533), Chadwyck-Healey (1,820), Text Analysis Computing Tools (311), the Early and Middle English Collections from the University of Virginia Electronic Text Centre (273 and 27 respectively), the Brown Women Writers Project (241), the Oxford Text Archive (241), the Early Tudor Textbase (180), Renascence Editions (162), the Christian Classics Ethereal Library (65), Elizabethan Authors (21), the Norwegian University of Science and Technology (8), the Richard III Society (5), the University of Nebraska School of Music (4), Project Bartleby (2), and Project Gutenberg (2). A master list of the primary text titles and their sources is included as Appendix 2. The harvesting and initial integration of these materials took a year, during which time various formats of almost 4 gigabytes of files were standardized into a basic TEI-compliant XML format. Roughly a dozen different implementations of XML, SGML, COCOA, HTML, plain text, and more eclectic encoding systems were accommodated.

For example, accommodating the XML TEI P4 conforming documents obtained from the University of Virginia Electronic Text Center’s Early English Collection required the following three-step process:

  1. EarlyUVaStepOne.xslApplication of an XSL transformation to remove the unnecessary XML tags, and to restructure the document using our internal-use tags. This step also derived a minimal set of metadata necessary for identifying the document with bibliographic MARC records.
  2. EarlyUVaStepTwo.xslThis step, applied to the cleaned, stripped and possibly restructured documents resulting from step one, transformed the XML list of our metadata into an HTML list, built links to the HTML and XML files, and provided some rudimentary navigation and statistics.
  3. EarlyUVaToHTML.xslApplied to either the source document or to the result of the first transformation, this process produced HTML suitable for web browsers. These transformations are very simple, producing only a minimum of HTML tagging. When we wish to serve more polished products to web browsers, this XSLT will serve as a starting point.

Questions & Answers

how does Neisseria cause meningitis
Nyibol Reply
what is microbiologist
Muhammad Reply
what is errata
Muhammad
is the branch of biology that deals with the study of microorganisms.
Ntefuni Reply
What is microbiology
Mercy Reply
studies of microbes
Louisiaste
when we takee the specimen which lumbar,spin,
Ziyad Reply
How bacteria create energy to survive?
Muhamad Reply
Bacteria doesn't produce energy they are dependent upon their substrate in case of lack of nutrients they are able to make spores which helps them to sustain in harsh environments
_Adnan
But not all bacteria make spores, l mean Eukaryotic cells have Mitochondria which acts as powerhouse for them, since bacteria don't have it, what is the substitution for it?
Muhamad
they make spores
Louisiaste
what is sporadic nd endemic, epidemic
Aminu Reply
the significance of food webs for disease transmission
Abreham
food webs brings about an infection as an individual depends on number of diseased foods or carriers dully.
Mark
explain assimilatory nitrate reduction
Esinniobiwa Reply
Assimilatory nitrate reduction is a process that occurs in some microorganisms, such as bacteria and archaea, in which nitrate (NO3-) is reduced to nitrite (NO2-), and then further reduced to ammonia (NH3).
Elkana
This process is called assimilatory nitrate reduction because the nitrogen that is produced is incorporated in the cells of microorganisms where it can be used in the synthesis of amino acids and other nitrogen products
Elkana
Examples of thermophilic organisms
Shu Reply
Give Examples of thermophilic organisms
Shu
advantages of normal Flora to the host
Micheal Reply
Prevent foreign microbes to the host
Abubakar
they provide healthier benefits to their hosts
ayesha
They are friends to host only when Host immune system is strong and become enemies when the host immune system is weakened . very bad relationship!
Mark
what is cell
faisal Reply
cell is the smallest unit of life
Fauziya
cell is the smallest unit of life
Akanni
ok
Innocent
cell is the structural and functional unit of life
Hasan
is the fundamental units of Life
Musa
what are emergency diseases
Micheal Reply
There are nothing like emergency disease but there are some common medical emergency which can occur simultaneously like Bleeding,heart attack,Breathing difficulties,severe pain heart stock.Hope you will get my point .Have a nice day ❣️
_Adnan
define infection ,prevention and control
Innocent
I think infection prevention and control is the avoidance of all things we do that gives out break of infections and promotion of health practices that promote life
Lubega
Heyy Lubega hussein where are u from?
_Adnan
en français
Adama
which site have a normal flora
ESTHER Reply
Many sites of the body have it Skin Nasal cavity Oral cavity Gastro intestinal tract
Safaa
skin
Asiina
skin,Oral,Nasal,GIt
Sadik
How can Commensal can Bacteria change into pathogen?
Sadik
How can Commensal Bacteria change into pathogen?
Sadik
all
Tesfaye
by fussion
Asiina
what are the advantages of normal Flora to the host
Micheal
what are the ways of control and prevention of nosocomial infection in the hospital
Micheal
what is inflammation
Shelly Reply
part of a tissue or an organ being wounded or bruised.
Wilfred
what term is used to name and classify microorganisms?
Micheal Reply
Binomial nomenclature
adeolu
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Source:  OpenStax, Online humanities scholarship: the shape of things to come. OpenStax CNX. May 08, 2010 Download for free at http://cnx.org/content/col11199/1.1
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